Type-1 diabetes
 
Type-1 diabetes

rs9272346
 Genotype  Effect
   AA    18.5x risk type-1 diabetes
   AG    5.5x risk type-1 diabetes
   GG    normal
Nature. 2007 Jun 7;447(7145):661-78. 
 
rs12094543
 Genotype  Effect
   AA    normal
   AG    1.3x risk
   GG    >1.3x risk
Nat Genet. 2007 Jul;39(7):857-64. 
 
rs3772534
 Genotype  Effect
   AA    ?
   AG    ?
   GG    ?
J Leukoc Biol. 2005 Apr;77(4):579-85. 
J Leukoc Biol. 2007 Mar;81(3):581-3. 
 
rs1445898
 Genotype  Effect
   AA   
   AG   
   GG   
Diabetologia. 2008 Sep;51(9):1653-8. 
 
rs1893217
 Genotype  Effect
   CC    ?
   CT    ?
   TT    ?
rs11052552
 Genotype  Effect
   TT    normal
   GT    1.5x risk
   GG    1.4x risk
Nature. 2007 Jun 7;447(7145):661-78. 
 
rs237025
 Genotype  Effect
   CC    VAL/VAL reduced diabetes susceptibility
   CT    MET/VAL moderate diabetes susceptibility
   TT    MET/MET increased diabetes susceptibility
J Clin Endocrinol Metab. 2007 Jun;92(6):2358-62. 
J Biol Chem. 2004 Jun 25;279(26):27233-8. 
 
rs3087243
 Genotype  Effect
   AA    average
   AG    increased risk for auto-immune diseases
   GG    increased risk for auto-immune diseases
J Clin Endocrinol Metab. 2006 Mar;91(3):1087-92. 
Am J Hum Genet. 2005 Dec;77(6):1044-60. 
Arthritis Rheum. 2004 Jul;50(7):2211-5. 
Transpl Immunol. 2008 Jan;18(3):246-9. 
 
rs2542151
 Genotype  Effect
   TT    normal
   GT    1.3x risk for Crohn's; 1.3x for T1D
   GG    2x risk for Crohn's; 1.6x for T1D
Nature. 2007 Jun 7;447(7145):661-78. 
Nat Genet. 2007 Jul;39(7):857-64. 
 
rs13293564
 Genotype  Effect
   TT    normal
   GT    normal
   GG    1.63x increased nephropathy risk among type-1 diabetics
Diabetes. 2008 Oct;57(10):2843-50. 
 
rs2076530
 Genotype  Effect
   AA    2x risk for sarcoidosis
   AG    increased risk for sarcoidosis
   GG    normal
Nat Genet. 2005 Apr;37(4):357-64. 
Am J Hum Genet. 2005 Sep;77(3):491-9. 
Hum Immunol. 2005 Dec;66(12):1235-41. 
 
rs706778
 Genotype  Effect
   AA    ?
   AG    ?
   GG    ?
Nature. 2007 Jun 7;447(7145):661-78. 
 
rs17388568
 Genotype  Effect
   AA    1.6x risk
   AG    1.3x risk
   GG    normal
Nature. 2007 Jun 7;447(7145):661-78. 
Nat Genet. 2007 Jul;39(7):857-64. 
 
rs2639703
 Genotype  Effect
   CC    1.6x risk
   CT    1.1x risk
   TT    normal
Nature. 2007 Jun 7;447(7145):661-78. 
 
rs3741208
 Genotype  Effect
   CC    ?
   CT    ?
   TT    ?
Nat Genet. 2007 Jul;39(7):857-64. 
 
rs763361
 Genotype  Effect
   CC    normal
   CT    somewhat increased risk for multiple autoimmune diseases
   TT    somewhat increased risk for multiple autoimmune diseases
Genes Immun. 2008 Oct 30. [Epub ahead of print] 
Genes Immun. 2008 Nov 6. [Epub ahead of print] 
Nat Genet. 2007 Jul;39(7):857-64. 
 
rs2292239
 Genotype  Effect
   AA    1.7x risk
   AC    1.3x risk
   CC    normal
Nat Genet. 2007 Jul;39(7):857-64. 
 
rs12708716 rs2104286
 Genotype  Effect
   AA    1.7x risk for RA; 1.6X for T1D; also MS?
   AG    1.4x risk for RA; 1.3x for T1D; also MS?
   GG    normal
Nature. 2007 Jun 7;447(7145):661-78. 
 
rs5215
 Genotype  Effect
   CC    ?
   CT    ?
   TT    ?
Nature. 2007 Jun 7;447(7145):661-78. 
 
rs5219
 Genotype  Effect
   CC    normal
   CT    slightly increased risk for diabetes
   TT    slightly increased risk for diabetes
Nature. 2007 Jun 7;447(7145):661-78. 
Diabetes. 2008 Jan;57(1):244-54. 
Diabetes. 2008 Mar;57(3):791-5. 
 
rs2544677
 Genotype  Effect
   CC    normal
   CG    1.3x risk
   GG    1.6x risk
Nature. 2007 Jun 7;447(7145):661-78. 
 
rs12150220
 Genotype  Effect
   AA    slightly increased risk for several autoimmune diseases
   AT    slightly increased risk for several autoimmune diseases
   TT    normal
Genes Immun. 2008 Oct 23. [Epub ahead of print] 
 
rs17166496
 Genotype  Effect
   CC    1.1x risk
   CG    0.8x risk
   GG    normal
Nature. 2007 Jun 7;447(7145):661-78. 
 
rs689
 Genotype  Effect
   AA    ?
   AT    ?
   TT    ?
Diabetes. 2004 Jul;53(7):1884-9. 
Nature. 2007 Jun 7;447(7145):661-78. 
 
rs3184504
 Genotype  Effect
   CC    normal
   CT    increased risk for celiac disease
   TT    increased risk for celiac disease
Nat Genet. 2008 Apr;40(4):395-402. 
Nat Genet. 2007 Jul;39(7):857-64. 
 
rs11171739
 Genotype  Effect
   CC    1.7x risk
   CT    1.3x risk
   TT    normal
Nature. 2007 Jun 7;447(7145):661-78. 
Nat Genet. 2007 Jul;39(7):857-64. 
 
rs17696736
 Genotype  Effect
   AA    normal
   AG    1.3x risk
   GG    1.9x risk
Nature. 2007 Jun 7;447(7145):661-78. 
Nat Genet. 2007 Jul;39(7):857-64. 
 
rs3129934
 Genotype  Effect
   CC    normal
   CT    normal
   TT    3.3x increased risk for multiple sclerosis
PLoS ONE. 2008;3(10):e3490. 
Nat Genet. 2007 Jul;39(7):857-64. 
 
rs6679677
 Genotype  Effect
   AA    5.2x risk for T1D; 3.3x for RA
   AC    1.8x risk for T1D; 2x risk for RA
   CC    normal
Nature. 2007 Jun 7;447(7145):661-78. 
Diabetes. 2008 Jun;57(6):1730-7. 
 
rs1801282
 Genotype  Effect
   CC    ?
   CG    ?
   GG    ?
Diabet Med. 2008 Aug;25(8):902-8. 
Nature. 2007 Jun 7;447(7145):661-78. 
Neurosci Lett. 2008 Mar 21;434(1):50-5.